AA_sims/Heptane461/NVT_prod/heptane.itp
AA_sims/Heptane461/NVT_prod/md.part0002.log
AA_sims/Heptane461/NVT_prod/md.part0003.log
AA_sims/Heptane461/NVT_prod/md.part0004.log
AA_sims/Heptane461/NVT_prod/mdout-heptane.461.mdp
AA_sims/Heptane461/NVT_prod/mdrun.log
AA_sims/Heptane461/NVT_prod/qsub_xj.sh
AA_sims/Heptane461/NVT_prod/run_gmx.sh
AA_sims/Heptane461/NVT_prod/state.cpt
AA_sims/Heptane461/NVT_prod/state_old.cpt
AA_sims/Heptane461/NVT_prod/state_prev.cpt
AA_sims/Heptane461/anneal/
AA_sims/Heptane461/anneal/#mdrun.log.1#
AA_sims/Heptane461/anneal/confout.part0002.gro
AA_sims/Heptane461/anneal/grompp.log
AA_sims/Heptane461/anneal/hep461_aa_anneal.o4961100
AA_sims/Heptane461/anneal/hep461_aa_anneal.o4990667
AA_sims/Heptane461/anneal/heptane.461.edr
AA_sims/Heptane461/anneal/heptane.461.extend.part0002.edr
AA_sims/Heptane461/anneal/heptane.461.gro
AA_sims/Heptane461/anneal/heptane.461.mdp
AA_sims/Heptane461/anneal/heptane.461.top
AA_sims/Heptane461/anneal/heptane.461.tpr
AA_sims/Heptane461/anneal/heptane.itp
AA_sims/Heptane461/anneal/md.part0002.log
AA_sims/Heptane461/anneal/mdout-heptane.461.mdp
AA_sims/Heptane461/anneal/mdrun.log
AA_sims/Heptane461/anneal/qsub_xj.sh
AA_sims/Heptane461/anneal/run_gmx.sh
AA_sims/Heptane461/anneal/state.cpt
AA_sims/Heptane461/anneal/state_old.cpt
AA_sims/Heptane461/anneal/state_prev.cpt
AA_sims/Heptane461/emin/
AA_sims/Heptane461/emin/#mdrun.log.1#
AA_sims/Heptane461/emin/energy.xvg
AA_sims/Heptane461/emin/grompp.log
AA_sims/Heptane461/emin/hep461_aa_emin.o3474397
AA_sims/Heptane461/emin/heptane.461.confout.gro
AA_sims/Heptane461/emin/heptane.461.edr
AA_sims/Heptane461/emin/heptane.461.gro
AA_sims/Heptane461/emin/heptane.461.mdp
AA_sims/Heptane461/emin/heptane.461.top
AA_sims/Heptane461/emin/heptane.461.tpr
AA_sims/Heptane461/emin/heptane.itp
AA_sims/Heptane461/emin/mdout-heptane.461.mdp
AA_sims/Heptane461/emin/mdout.mdp
AA_sims/Heptane461/emin/mdrun.log
AA_sims/Heptane461/emin/out.gro
AA_sims/Heptane461/emin/qsub_xj.sh
AA_sims/Heptane461/emin/run_gmx.sh
AA_sims/Toluene642/
AA_sims/Toluene642/2body_rerun/
AA_sims/Toluene642/2body_rerun/#md.log.1#
AA_sims/Toluene642/2body_rerun/#md.log.2#
AA_sims/Toluene642/2body_rerun/#rerun.edr.1#
AA_sims/Toluene642/2body_rerun/manual_2body.top
AA_sims/Toluene642/2body_rerun/md.log
AA_sims/Toluene642/2body_rerun/mdout.mdp
AA_sims/Toluene642/2body_rerun/nb_potential.xvg
AA_sims/Toluene642/2body_rerun/qsub_rerun.sh
AA_sims/Toluene642/2body_rerun/rerun.edr
AA_sims/Toluene642/2body_rerun/tol642_NPT2_2body_inter_rerun.o4184648
AA_sims/Toluene642/2body_rerun/toluene.2body.itp
AA_sims/Toluene642/2body_rerun/toluene.2body.mdp
AA_sims/Toluene642/2body_rerun/toluene.2body.top
AA_sims/Toluene642/2body_rerun/toluene.2body.tpr
AA_sims/Toluene642/2body_rerun_NVT/
AA_sims/Toluene642/2body_rerun_NVT/2body.tpr
AA_sims/Toluene642/2body_rerun_NVT/md.log
AA_sims/Toluene642/2body_rerun_NVT/mdout.mdp
AA_sims/Toluene642/2body_rerun_NVT/nb_potential.xvg
AA_sims/Toluene642/2body_rerun_NVT/qsub_rerun.sh
AA_sims/Toluene642/2body_rerun_NVT/rerun.edr
AA_sims/Toluene642/2body_rerun_NVT/tol642_NVT_2body_inter_rerun.o4408739
AA_sims/Toluene642/2body_rerun_NVT/toluene.2body.itp
AA_sims/Toluene642/2body_rerun_NVT/toluene.2body.mdp
AA_sims/Toluene642/2body_rerun_NVT/toluene.2body.top
AA_sims/Toluene642/NPT_1/
AA_sims/Toluene642/NPT_1/#mdrun.log.1#
AA_sims/Toluene642/NPT_1/mdout-toluene.642.mdp
AA_sims/Toluene642/NPT_1/mdrun.log
AA_sims/Toluene642/NPT_1/qsub_xj.sh
AA_sims/Toluene642/NPT_1/run_gmx.sh
AA_sims/Toluene642/NPT_1/state.cpt
AA_sims/Toluene642/NPT_1/state_prev.cpt
AA_sims/Toluene642/NPT_1/tol642_aa_NPT_1.o4990669
AA_sims/Toluene642/NPT_1/toluene.642.confout.gro
AA_sims/Toluene642/NPT_1/toluene.642.edr
AA_sims/Toluene642/NPT_1/toluene.642.gro
AA_sims/Toluene642/NPT_1/toluene.642.mdp
AA_sims/Toluene642/NPT_1/toluene.642.top
AA_sims/Toluene642/NPT_1/toluene.642.tpr
AA_sims/Toluene642/NPT_1/toluene.itp
AA_sims/Toluene642/NPT_2/
AA_sims/Toluene642/NPT_2/#U_W.xvg.1#
AA_sims/Toluene642/NPT_2/#md.log.1#
AA_sims/Toluene642/NPT_2/#rerun.edr.1#
AA_sims/Toluene642/NPT_2/U_W.xvg
AA_sims/Toluene642/NPT_2/aa_kineticE.xvg
AA_sims/Toluene642/NPT_2/aa_pressures.xvg
AA_sims/Toluene642/NPT_2/aa_volumes.xvg
AA_sims/Toluene642/NPT_2/confout.part0006.gro
AA_sims/Toluene642/NPT_2/full_traj.edr