Results/ Results/ Results/Figures/ Results/Figures/Figure1-mod.agr Results/Figures/Figure1.agr Results/Figures/Figure2.agr Results/Figures/Figure3-mod.agr Results/Figures/Figure3.agr Results/Figures/Figure4.agr Results/Figures/Figure5.agr Results/Figures/Figure6/ Results/Figures/Figure6/CGM-SPH-orientation.eps Results/Figures/Figure6/CGM-SPH-orientation.jpg Results/Figures/Figure6/CGM-SPH-orientation.ppt Results/Figures/Figure6/CGM-SPH-orientation2.eps Results/Figures/Figure6/CGM-SPH-orientation2.jpg Results/Figures/Figure6/CGM-SPH2.jpg Results/Figures/Figure6/SPH-CGM.vmd Results/Figures/Figure6/State2.vmd Results/Figures/Figure6/cgMethanolSPH.gro Results/Figures/butane-dist/ Results/Figures/butane-dist/CH2A-CH2B-CH3B.xvg Results/Figures/butane-dist/CH3-CH2-CH2-CH3.xvg Results/Figures/butane-dist/CH3A-CH2A-CH2B.xvg Results/Figures/butane-dist/Figure1-mod.agr Results/Figures/butane-dist/bond-CH2-CH2.Bu.xvg Results/Figures/butane-dist/bond-CH3-CH2.Bu.xvg Results/Figures/butane-dist/rdfCH2-CH2.xvg Results/Figures/butane-dist/rdfCH2-CH3.xvg Results/Figures/butane-dist/rdfCH3-CH3.xvg Results/Figures/methanol-dist/ Results/Figures/methanol-dist/Figure3-mod.agr Results/Figures/methanol-dist/rdf.mapped.CGC-CGC.DispCorrect.1000-6000.xvg Results/Figures/methanol-dist/rdf.mapped.CGC-CGO.DispCorrect.1000-6000.xvg Results/Figures/methanol-dist/rdf.mapped.CGO-CGO.DispCorrect.1000-6000.xvg Results/Figures/methanol-dist/rdf.mapped.SPH-CGC.DispCorrect.1000-6000.xvg Results/Figures/methanol-dist/rdf.mapped.SPH-CGO.DispCorrect.1000-6000.xvg Results/Jun6.methanol/ Results/Jun6.methanol/Figures/ Results/Jun6.methanol/Figures/CGM-b-convergence-diff.jpg Results/Jun6.methanol/Figures/CGM-b-convergence.agr Results/Jun6.methanol/Figures/CGM-b-convergence.diff.agr Results/Jun6.methanol/Figures/CGM-b-convergence.jpg Results/Jun6.methanol/Figures/CGM-forces-convergence.agr Results/Jun6.methanol/Figures/CGM-forces-convergence.jpg Results/Jun6.methanol/Figures/CGM-forces-differences.agr Results/Jun6.methanol/Figures/CGM-forces-differences.jpg Results/Jun6.methanol/Figures/ConvergTest.agr Results/Jun6.methanol/Figures/ConvergTest.jpg Results/Jun6.methanol/Figures/IgnoreSphTest.agr Results/Jun6.methanol/Figures/IgnoreSphTest.jpg Results/Jun6.methanol/Figures/IgnoreSphTestDiff.agr Results/Jun6.methanol/Figures/IgnoreSphTestDiff.jpg Results/Jun6.methanol/methanol-ref-converg-test.aux Results/Jun6.methanol/methanol-ref-converg-test.log Results/Jun6.methanol/methanol-ref-converg-test.pdf Results/Jun6.methanol/methanol-ref-converg-test.tex Results/butane/ Results/butane/cgff-butane-272K-5000frames-bond-inter.agr Results/butane/cgff-butane-272K-5000frames-bond-inter.eps Results/butane/cgff-butane-272K-5000frames-nb-inter.agr Results/butane/cgff-butane-272K-5000frames-nb-inter.eps Results/butane/cgff-butane-272K-5000frames-smooth-bond-ref-calc.agr Results/butane/cgff-butane-272K-5000frames-smooth-bond-ref-calc.eps Results/butane/cgff-butane-272K-5000frames-smooth-nb-ref-calc.agr Results/butane/cgff-butane-272K-5000frames-smooth-nb-ref-calc.eps Results/butane/diff-cgff-butane-272K-5000frames-smooth-bond-ref-calc.agr Results/butane/diff-cgff-butane-272K-5000frames-smooth-bond-ref-calc.eps Results/butane/diff-cgff-butane-272K-5000frames-smooth-nb-ref-calc.agr Results/butane/diff-cgff-butane-272K-5000frames-smooth-nb-ref-calc.eps Results/figure-drafts/ Results/figure-drafts/Figure1/ Results/figure-drafts/Figure1/Figure1.agr Results/figure-drafts/Figure1/originals/ Results/figure-drafts/Figure1/originals/CH2-CH2-forces.dat Results/figure-drafts/Figure1/originals/CH2-CH2-struct.dat Results/figure-drafts/Figure1/originals/CH3-CH2-forces.dat Results/figure-drafts/Figure1/originals/CH3-CH2-struct.dat Results/figure-drafts/Figure1/originals/CH3-CH3-forces.dat Results/figure-drafts/Figure1/originals/CH3-CH3-struct.dat Results/figure-drafts/Figure1/originals/cgff-butane-272K-5000frames-bond-inter.agr 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Results/figure-drafts/Figure4/Figure4.agr Results/figure-drafts/Figure4/original/ Results/figure-drafts/Figure4/original/RDFs-MethanolSPH-2-site.agr Results/figure-drafts/Figure5/ Results/figure-drafts/Figure5/Figure5.agr Results/figure-drafts/Figure5/original/ Results/figure-drafts/Figure5/original/orientation-updated-MetholSPH.agr Results/figure-drafts/Figure6/ Results/figure-drafts/Figure6/CGM-SPH-orientation.eps Results/figure-drafts/Figure6/CGM-SPH-orientation.jpg Results/figure-drafts/Figure6/CGM-SPH-orientation.ppt Results/figure-drafts/Figure6/CGM-SPH-orientation2.eps Results/figure-drafts/Figure6/CGM-SPH-orientation2.jpg Results/figure-drafts/Figure6/CGM-SPH2.jpg Results/figure-drafts/Figure6/SPH-CGM.vmd Results/figure-drafts/Figure6/State2.vmd Results/figure-drafts/Figure6/cgMethanolSPH.gro Results/methanol/ Results/methanol/BondDist-2-site-MethanolSPH.agr Results/methanol/BondDist-2-site-MethanolSPH.eps Results/methanol/CGFF-2Site-Methanol.agr Results/methanol/CGFF-2Site-Methanol.eps Results/methanol/CGFF-Force-1Site-Methanol.agr Results/methanol/CGFF-Force-1Site-Methanol.eps Results/methanol/Compare-RDF-SPH-CGM-2Site-MethanolSHP.agr Results/methanol/Compare-RDF-SPH-CGM-2Site-MethanolSHP.eps Results/methanol/Forces-MethanolSPH-2-site.agr Results/methanol/Forces-MethanolSPH-2-site.eps Results/methanol/Potential-MethanolSPH-2-site.agr Results/methanol/Potential-MethanolSPH-2-site.eps Results/methanol/RDFs-MethanolSPH-1site.agr Results/methanol/RDFs-MethanolSPH-1site.eps Results/methanol/RDFs-MethanolSPH-2-site.agr Results/methanol/RDFs-MethanolSPH-2-site.eps Results/methanol/WCA-AA-Potential.agr Results/methanol/WCA-AA-Potential.eps Results/methanol/forces-1Site-MethanolSPH.agr Results/methanol/forces-1Site-MethanolSPH.eps Results/methanol/orientation-updated-MetholSPH.agr Results/methanol/orientation-updated-MetholSPH.eps Results/methanol/potential-1Site-MethanolSPH.agr Results/methanol/potential-1Site-MethanolSPH.eps