butane-ref/
butane-ref/
butane-ref/CG-sim/
butane-ref/CG-sim/CG-sim.Mar18.2010/
butane-ref/CG-sim/CG-sim.Mar18.2010/#mdrun.log.1#
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/angles/
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/angles/angle.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/angles/angle.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/angles/angle.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/angles/angle.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/CH2_CH2.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/CH3_CH2.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/bond.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/bond.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/dist.CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/bonds/dist.CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/cgBu-bond-dist.agr
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/cgBu-rdfs.agr
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/cgBu.tpr
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/cgBu.trr
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/dihedrals/
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/dihedrals/dihedral.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/dihedrals/dihedral.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/dihedrals/dihedral.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/dihedrals/dihedral.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/cgBu.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/ndx.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdf.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH2-CH2.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH2-CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH3-CH2.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH3-CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH3-CH3.log
butane-ref/CG-sim/CG-sim.Mar18.2010/analysis/rdfs/rdfCH3-CH3.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/cg-butane.o1026071
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.edr
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.prod.log
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.top
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.tpr
butane-ref/CG-sim/CG-sim.Mar18.2010/cgBu.trr
butane-ref/CG-sim/CG-sim.Mar18.2010/confout.gro
butane-ref/CG-sim/CG-sim.Mar18.2010/grompp.log
butane-ref/CG-sim/CG-sim.Mar18.2010/mdout-cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar18.2010/mdrun.log
butane-ref/CG-sim/CG-sim.Mar18.2010/qsub.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/reduce_frames.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/run_gmx.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/cgBu.top
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/gmx4_s.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start-files/table_index.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/start/
butane-ref/CG-sim/CG-sim.Mar18.2010/start/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar18.2010/start/cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar18.2010/start/cgBu.top
butane-ref/CG-sim/CG-sim.Mar18.2010/start/qsub.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/start/run_gmx.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/start/table_index.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/state.cpt
butane-ref/CG-sim/CG-sim.Mar18.2010/state_prev.cpt
butane-ref/CG-sim/CG-sim.Mar18.2010/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/table_index.ndx
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/angle.f.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/bond.CH2-CH2.f.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/bond.CH3-CH2.f.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/dihedral.f.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/bond-potentials-Butane-5000frames-cgff.agr
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/nb-potentials-Butane-5000frames-cgff.agr
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.dihedral.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.nb.CH2-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.nb.CH3-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.nb.CH3-CH3.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.quartic.angle.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.quartic.bond.CH2-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/potentials/potential.quartic.bond.CH3-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/run.make_gmx4_table.sh
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/smooth-f.CH2-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/smooth-f.CH3-CH2.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/smooth-f.CH3-CH3.dat
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar18.2010/tables/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/
butane-ref/CG-sim/CG-sim.Mar21.2010/#mdrun.log.1#
butane-ref/CG-sim/CG-sim.Mar21.2010/ABOUT
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/angles/
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/angles/angle.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/angles/angle.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/angles/angle.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/angles/angle.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/CH2_CH2.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/CH3_CH2.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/bond.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/bond.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/dist.CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/bonds/dist.CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/cgBu-bond-dist.agr
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/cgBu-rdfs.agr
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/cgBu.tpr
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/cgBu.trr
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/dihedrals/
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/dihedrals/dihedral.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/dihedrals/dihedral.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/dihedrals/dihedral.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/dihedrals/dihedral.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/cgBu.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/ndx.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdf.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH2-CH2.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH2-CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH3-CH2.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH3-CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH3-CH3.log
butane-ref/CG-sim/CG-sim.Mar21.2010/analysis/rdfs/rdfCH3-CH3.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/cg-butane.o1033909
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.edr
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.prod.log
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.top
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.tpr
butane-ref/CG-sim/CG-sim.Mar21.2010/cgBu.trr
butane-ref/CG-sim/CG-sim.Mar21.2010/confout.gro
butane-ref/CG-sim/CG-sim.Mar21.2010/energy.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/grompp.log
butane-ref/CG-sim/CG-sim.Mar21.2010/mdout-cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar21.2010/mdrun.log
butane-ref/CG-sim/CG-sim.Mar21.2010/qsub.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/reduce_frames.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/run_gmx.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/cgBu.gro
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/cgBu.mdp
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/cgBu.top
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/start-files/table_index.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/state.cpt
butane-ref/CG-sim/CG-sim.Mar21.2010/state_prev.cpt
butane-ref/CG-sim/CG-sim.Mar21.2010/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_d4.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/table_index.ndx
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/run.make_gmx4_table.sh
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_CH2_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_CH3_CH2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_CH3_CH3.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_a2.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_b0.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_b1.xvg
butane-ref/CG-sim/CG-sim.Mar21.2010/tables/table_d4.xvg
butane-ref/CGFF/
butane-ref/CGFF/ABOUT
butane-ref/CGFF/CGFF-Mar17.2010/
butane-ref/CGFF/CGFF-Mar17.2010/L/
butane-ref/CGFF/CGFF-Mar17.2010/L/total/
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/cgBu.tpr
butane-ref/CGFF/CGFF-Mar17.2010/cgff-Bu.o1025689
butane-ref/CGFF/CGFF-Mar17.2010/forces/
butane-ref/CGFF/CGFF-Mar17.2010/forces/cgff-butane-272K-5000frames-bond-inter.agr
butane-ref/CGFF/CGFF-Mar17.2010/forces/cgff-butane-272K-5000frames-nb-inter.agr
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/temp/
butane-ref/CGFF/CGFF-Mar17.2010/forces/forces/total/temp/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/
butane-ref/CGFF/CGFF-Mar17.2010/g/total/
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar17.2010/inp.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/
butane-ref/CGFF/CGFF-Mar17.2010/log/log.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_global.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc0.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc1.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc2.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc3.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc4.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc5.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc6.txt
butane-ref/CGFF/CGFF-Mar17.2010/log/log_proc7.txt
butane-ref/CGFF/CGFF-Mar17.2010/out.txt
butane-ref/CGFF/CGFF-Mar17.2010/par.txt
butane-ref/CGFF/CGFF-Mar17.2010/qsub.sh
butane-ref/CGFF/CGFF-Mar17.2010/sort.sh
butane-ref/CGFF/CGFF-Mar24.2010/
butane-ref/CGFF/CGFF-Mar24.2010/L/
butane-ref/CGFF/CGFF-Mar24.2010/L/total/
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/cgBu.tpr
butane-ref/CGFF/CGFF-Mar24.2010/cgff-Bu.o1044840
butane-ref/CGFF/CGFF-Mar24.2010/forces/
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/
butane-ref/CGFF/CGFF-Mar24.2010/g/total/
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar24.2010/inp.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/
butane-ref/CGFF/CGFF-Mar24.2010/log/log.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_global.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc0.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc1.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc2.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc3.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc4.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc5.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc6.txt
butane-ref/CGFF/CGFF-Mar24.2010/log/log_proc7.txt
butane-ref/CGFF/CGFF-Mar24.2010/out.txt
butane-ref/CGFF/CGFF-Mar24.2010/par.txt
butane-ref/CGFF/CGFF-Mar24.2010/qsub.sh
butane-ref/CGFF/CGFF-Mar24.2010/sort.sh
butane-ref/CGFF/CGFF-Mar25.2010/
butane-ref/CGFF/CGFF-Mar25.2010/L/
butane-ref/CGFF/CGFF-Mar25.2010/L/total/
butane-ref/CGFF/CGFF-Mar25.2010/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/
butane-ref/CGFF/CGFF-Mar25.2010/b/forces/
butane-ref/CGFF/CGFF-Mar25.2010/b/forces/total/
butane-ref/CGFF/CGFF-Mar25.2010/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/struct/
butane-ref/CGFF/CGFF-Mar25.2010/b/struct/total/
butane-ref/CGFF/CGFF-Mar25.2010/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/f-angle.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/f-bond-CH2-CH2.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/f-bond-CH3-CH2.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/f-dihedral.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/p-angle.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/p-bond-CH2-CH2.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/p-bond-CH3-CH2.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/p-dihedral.dat
butane-ref/CGFF/CGFF-Mar25.2010/bond-forces/run.sh
butane-ref/CGFF/CGFF-Mar25.2010/cgBu.tpr
butane-ref/CGFF/CGFF-Mar25.2010/cgff-Bu.o1053867
butane-ref/CGFF/CGFF-Mar25.2010/forces/
butane-ref/CGFF/CGFF-Mar25.2010/forces/forces/
butane-ref/CGFF/CGFF-Mar25.2010/forces/forces/total/
butane-ref/CGFF/CGFF-Mar25.2010/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Mar25.2010/forces/struct/
butane-ref/CGFF/CGFF-Mar25.2010/forces/struct/total/
butane-ref/CGFF/CGFF-Mar25.2010/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Mar25.2010/g/
butane-ref/CGFF/CGFF-Mar25.2010/g/total/
butane-ref/CGFF/CGFF-Mar25.2010/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/g_cnt/
butane-ref/CGFF/CGFF-Mar25.2010/g_cnt/total/
butane-ref/CGFF/CGFF-Mar25.2010/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Mar25.2010/inp.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/
butane-ref/CGFF/CGFF-Mar25.2010/log/log.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_global.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc0.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc1.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc10.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc11.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc12.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc13.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc14.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc15.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc2.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc3.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc4.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc5.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc6.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc7.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc8.txt
butane-ref/CGFF/CGFF-Mar25.2010/log/log_proc9.txt
butane-ref/CGFF/CGFF-Mar25.2010/out.txt
butane-ref/CGFF/CGFF-Mar25.2010/par.txt
butane-ref/CGFF/CGFF-Mar25.2010/qsub.sh
butane-ref/CGFF/CGFF-Mar25.2010/sort.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/cgff-butane-272K-5000frames-harmonic-bond-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/cgff-butane-272K-5000frames-quartic-bond-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/cgff-butane-272K-5000frames-smooth-nb-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cgff-butane-272K-5000frames-harmonic-bond-inter.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cgff-butane-272K-5000frames-quartic-bond-inter.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cgff-butane-272K-nb-smooth-inter-ref.agr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/angle.CH3-CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/dihedral.CH3-CH2-CH2-CH3.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/cut-forces/dihedral.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/nb.f.CH2-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/nb.f.CH3-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/nb.f.CH3-CH3.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/run.make_gmx4_table.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/smooth-f.CH2-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/smooth-f.CH3-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/smooth-f.CH3-CH3.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/table_CH2_CH2.xvg
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/table_CH3_CH2.xvg
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/nb-smooth-forces/table_CH3_CH3.xvg
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/original-forces/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/angle.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/angle.f.deg.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/dihedral.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/dihedral.f.deg.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/equal-angle-spacing/prepare_angle_files.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/harmonic-bond/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/angle.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/angle.f.deg.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/dihedral.f.deg.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/prepare_angle_files.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/ref-f.angle.deg.correct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/ref-f.dihedral.deg.correct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/equal-angle-spacing/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/quartic-potential/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/smooth-f.CH2-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/smooth-f.CH3-CH2.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/create-ref-force-files/ref-forces/smooth-f.CH3-CH3.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/inp.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/out.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/par.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/qsub.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref-bond-harmonic.o1026033
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref.bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref.bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/ref.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/harmonic-bond-ref/sort.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/inp.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/out.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/par.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/qsub.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref-bond-quart.o1026034
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref.bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref.bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/ref.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/quartic-bond-ref/sort.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/inp.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/out.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/par.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/qsub.sh
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/ref-nb-smooth.o1026031
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/ref.nb.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/ref.nb.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/ref.nb.CH3-CH3.f.dat
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/ref.txt
butane-ref/CGFF/CGFF-Ref-fit.Mar18.2010/smooth-nb-ref/sort.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/inp.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/out.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/par.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/qsub.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref-bond.o1025988
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref.bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref.bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/ref.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/bond-ref/sort.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/cgff-butane-272K-5000frames-bond-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/cgff-butane-272K-5000frames-nb-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/inp.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/out.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/par.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/qsub.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/ref-nb.o1025989
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/ref.nb.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/ref.nb.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/ref.nb.CH3-CH3.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/ref.txt
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/nb-ref/sort.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/original-forces/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/prepare_angle_files.sh
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.nb.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.nb.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-no-fit.Mar18.2010/ref-force-files/ref.nb.CH3-CH3.f.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH2-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH2-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH3-CH2-BondStretch-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH3-CH2-CH2-Angle-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH3-CH2-CH2-CH3-Dihedral-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH3-CH2-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/L/total/CH3-CH3-NB_PairInter-L-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH2-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH2-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH3-CH2-BondStretch-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH3-CH2-CH2-Angle-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH3-CH2-CH2-CH3-Dihedral-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH3-CH2-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/forces/total/CH3-CH3-NB_PairInter-b-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH2-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH2-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH3-CH2-BondStretch-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH3-CH2-CH2-Angle-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH3-CH2-CH2-CH3-Dihedral-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH3-CH2-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/b/struct/total/CH3-CH3-NB_PairInter-b-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/cgBu.tpr
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH2-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH2-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH3-CH2-BondStretch-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH3-CH2-CH2-Angle-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH3-CH2-CH2-CH3-Dihedral-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH3-CH2-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/forces/total/CH3-CH3-NB_PairInter-f-total.forces.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/forces/struct/total/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH2-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH2-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH3-CH2-BondStretch-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH3-CH2-CH2-Angle-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH3-CH2-CH2-CH3-Dihedral-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH3-CH2-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g/total/CH3-CH3-NB_PairInter-g-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH2-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH2-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH3-CH2-BondStretch-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH3-CH2-CH2-Angle-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH3-CH2-CH2-CH3-Dihedral-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH3-CH2-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/g_cnt/total/CH3-CH3-NB_PairInter-g_cnt-total.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/inp.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_global.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc0.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc1.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc2.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc3.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc4.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc5.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc6.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/log/log_proc7.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/out.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/par.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/qsub.sh
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref-butane.o1029404
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref.angle.f.rad.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref.bond.CH2-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref.bond.CH3-CH2.f.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref.dihedral.f.rad.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/ref.txt
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/CGFF/sort.sh
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/angle-rads/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/angle-rads/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/angle-rads/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/angle-rads/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/angle-rads/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cgff-butane-272K-5000frames-smooth-bond-ref-calc.agr
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/smooth-f.angle.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/smooth-f.bond.CH2-CH2.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/cut-zeros/smooth-f.bond.CH3-CH2.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH2-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH2-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH3-CH2-BondStretch-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH3-CH2-CH2-Angle-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH3-CH2-CH2-CH3-Dihedral-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH3-CH2-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/CGFF-Ref-smooth-bond.Mar19.2010/original-files/CH3-CH3-NB_PairInter-f-total.struct.dat
butane-ref/CGFF/June.2.2010/
butane-ref/CGFF/June.2.2010/L.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/L.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/L.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/L.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/L.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/L.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/L.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/L/
butane-ref/CGFF/June.2.2010/L/total/
butane-ref/CGFF/June.2.2010/b/
butane-ref/CGFF/June.2.2010/b/forces/
butane-ref/CGFF/June.2.2010/b/forces/total/
butane-ref/CGFF/June.2.2010/b/struct/
butane-ref/CGFF/June.2.2010/b/struct/total/
butane-ref/CGFF/June.2.2010/b_forces.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/b_forces.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/b_forces.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/b_forces.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/b_forces.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/b_forces.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/b_forces.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/b_struct.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/b_struct.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/b_struct.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/b_struct.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/b_struct.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/b_struct.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/b_struct.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/cgBu.tpr
butane-ref/CGFF/June.2.2010/cgff-Bu.o1207166
butane-ref/CGFF/June.2.2010/dg_dz.total.Angle.Angles.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.BondStretch.BondM.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.BondStretch.BondT.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.Dihedral.Dihedrals.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.Pair_Interaction.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.Pair_Interaction.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/dg_dz.total.Pair_Interaction.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/f_forces.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/f_forces.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/f_forces.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/f_forces.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/f_forces.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/f_forces.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/f_forces.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/f_struct.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/f_struct.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/f_struct.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/f_struct.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/f_struct.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/f_struct.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/f_struct.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/forces/
butane-ref/CGFF/June.2.2010/forces/forces/
butane-ref/CGFF/June.2.2010/forces/forces/total/
butane-ref/CGFF/June.2.2010/forces/struct/
butane-ref/CGFF/June.2.2010/forces/struct/total/
butane-ref/CGFF/June.2.2010/g.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/g.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/g.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/g.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/g.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/g.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/g.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/g/
butane-ref/CGFF/June.2.2010/g/total/
butane-ref/CGFF/June.2.2010/g_cnt/
butane-ref/CGFF/June.2.2010/g_cnt/total/
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.Angle.total.Angles.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.BondStretch.total.BondM.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.BondStretch.total.BondT.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.Dihedral.total.Dihedrals.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.Pair_Interaction.total.CH2-CH2.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.Pair_Interaction.total.CH3-CH2.dat
butane-ref/CGFF/June.2.2010/g_cnt/total/g_cnt.Pair_Interaction.total.CH3-CH3.dat
butane-ref/CGFF/June.2.2010/inp.txt
butane-ref/CGFF/June.2.2010/log/
butane-ref/CGFF/June.2.2010/log/log.txt
butane-ref/CGFF/June.2.2010/out.total.txt
butane-ref/CGFF/June.2.2010/par.txt
butane-ref/CGFF/June.2.2010/qsub.sh
butane-ref/CGFF/June.2.2010/sort.sh
butane-ref/CGFF/June.2.2010/summarize_input.txt
butane-ref/CGFF/June.2.2010/test.agr
butane-ref/CGFF/June.2.2010/test_num_soln.dat
butane-ref/CGFF/cgff-butane-272K-5000frames-bond-inter.agr
butane-ref/CGFF/cgff-butane-272K-5000frames-nb-inter.agr
butane-ref/CGFF/src/
butane-ref/CGFF/src/convert_angle_forces/
butane-ref/CGFF/src/convert_angle_forces/a.out
butane-ref/CGFF/src/convert_angle_forces/convert.c
butane-ref/Results/
butane-ref/Results/document/
butane-ref/Results/document/AA-Sims.tex
butane-ref/Results/document/Butane-ref.aux
butane-ref/Results/document/Butane-ref.log
butane-ref/Results/document/Butane-ref.pdf
butane-ref/Results/document/Butane-ref.tex
butane-ref/Results/document/CG-Sims.tex
butane-ref/Results/document/CGFF.tex
butane-ref/Results/document/Figures.tex
butane-ref/Results/document/figures/
butane-ref/Results/document/figures/bond-potentials-Butane-5000frames-cgff.jpg
butane-ref/Results/document/figures/cgff-butane-272K-5000frames-bond-inter.jpg
butane-ref/Results/document/figures/cgff-butane-272K-5000frames-harmonic-bond-inter.jpg
butane-ref/Results/document/figures/cgff-butane-272K-5000frames-nb-inter.jpg
butane-ref/Results/document/figures/cgff-butane-272K-5000frames-quartic-bond-inter.jpg
butane-ref/Results/document/figures/cgff-butane-272K-nb-smooth-inter-ref.jpg
butane-ref/Results/document/figures/nb-potentials-Butane-5000frames-cgff.jpg
butane-ref/Results/xmgrace-files/
butane-ref/Results/xmgrace-files/ABOUT
butane-ref/Results/xmgrace-files/old/
butane-ref/Results/xmgrace-files/old/bond-potentials-Butane-5000frames-cgff.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-5000frames-bond-inter.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-5000frames-harmonic-bond-inter.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-5000frames-nb-inter.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-5000frames-quartic-bond-inter.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-5000frames-smooth-bond-ref-calc.agr
butane-ref/Results/xmgrace-files/old/cgff-butane-272K-nb-smooth-inter-ref.agr
butane-ref/Results/xmgrace-files/old/nb-potentials-Butane-5000frames-cgff.agr
butane-ref/aa-mapped/
butane-ref/aa-mapped/1000frames/
butane-ref/aa-mapped/1000frames/cgBu.gro
butane-ref/aa-mapped/1000frames/cgBu.log
butane-ref/aa-mapped/1000frames/cgBu.tpr
butane-ref/aa-mapped/1000frames/cgBu.trr
butane-ref/aa-mapped/1000frames/reduce_frames.sh
butane-ref/aa-mapped/CGMap.sh
butane-ref/aa-mapped/analysis/
butane-ref/aa-mapped/analysis/aa-mapped-bond-dist.agr
butane-ref/aa-mapped/analysis/aa-mapped-rdfs.agr
butane-ref/aa-mapped/analysis/angles/
butane-ref/aa-mapped/analysis/angles/angle.log
butane-ref/aa-mapped/analysis/angles/angle.ndx
butane-ref/aa-mapped/analysis/angles/angle.sh
butane-ref/aa-mapped/analysis/angles/angle.xvg
butane-ref/aa-mapped/analysis/bonds/
butane-ref/aa-mapped/analysis/bonds/CH2_CH2.log
butane-ref/aa-mapped/analysis/bonds/CH2_CH2.xvg
butane-ref/aa-mapped/analysis/bonds/CH3_CH2.log
butane-ref/aa-mapped/analysis/bonds/CH3_CH2.xvg
butane-ref/aa-mapped/analysis/bonds/bond.ndx
butane-ref/aa-mapped/analysis/bonds/bond.sh
butane-ref/aa-mapped/analysis/bonds/dist.CH2_CH2.xvg
butane-ref/aa-mapped/analysis/bonds/dist.CH3_CH2.xvg
butane-ref/aa-mapped/analysis/dihedral/
butane-ref/aa-mapped/analysis/dihedral/dihedral.log
butane-ref/aa-mapped/analysis/dihedral/dihedral.ndx
butane-ref/aa-mapped/analysis/dihedral/dihedral.sh
butane-ref/aa-mapped/analysis/dihedral/dihedral.xvg
butane-ref/aa-mapped/analysis/rdfs/
butane-ref/aa-mapped/analysis/rdfs/cgBu.ndx
butane-ref/aa-mapped/analysis/rdfs/ndx.log
butane-ref/aa-mapped/analysis/rdfs/rdf.sh
butane-ref/aa-mapped/analysis/rdfs/rdfCH2-CH2.log
butane-ref/aa-mapped/analysis/rdfs/rdfCH2-CH2.xvg
butane-ref/aa-mapped/analysis/rdfs/rdfCH3-CH2.log
butane-ref/aa-mapped/analysis/rdfs/rdfCH3-CH2.xvg
butane-ref/aa-mapped/analysis/rdfs/rdfCH3-CH3.log
butane-ref/aa-mapped/analysis/rdfs/rdfCH3-CH3.xvg
butane-ref/aa-mapped/cgBu.gro
butane-ref/aa-mapped/cgBu.mdp
butane-ref/aa-mapped/cgBu.top
butane-ref/aa-mapped/cgBu.tpr
butane-ref/aa-mapped/cgBu.trr
butane-ref/aa-mapped/mapBu.top
butane-ref/aa-mapped/mdout.mdp
butane-ref/aa-mapped/pictures/
butane-ref/aa-mapped/pictures/aaBu.gro
butane-ref/aa-mapped/pictures/aaButane.tga
butane-ref/aa-mapped/pictures/caButane.tga
butane-ref/aa-mapped/pictures/cgBu.gro
butane-ref/aa-mapped/pictures/mapping1.vmd
butane-ref/aa-mapped/pictures/mapping2.vmd
butane-ref/aa-mapped/pictures/mixedButane.tga
butane-ref/aa-sims/
butane-ref/aa-sims/TPN/
butane-ref/aa-sims/TPN/#energy.xvg.1#
butane-ref/aa-sims/TPN/#energy.xvg.2#
butane-ref/aa-sims/TPN/#energy.xvg.3#
butane-ref/aa-sims/TPN/Bu-TPN.o988937
butane-ref/aa-sims/TPN/Bu.ref.edr
butane-ref/aa-sims/TPN/Bu.ref.gro
butane-ref/aa-sims/TPN/Bu.ref.mdp
butane-ref/aa-sims/TPN/Bu.ref.top
butane-ref/aa-sims/TPN/Bu.ref.tpr
butane-ref/aa-sims/TPN/Bu.ref.trr
butane-ref/aa-sims/TPN/butane_oplsaa.itp
butane-ref/aa-sims/TPN/confout.gro
butane-ref/aa-sims/TPN/energy.log
butane-ref/aa-sims/TPN/energy.xvg
butane-ref/aa-sims/TPN/grompp.log
butane-ref/aa-sims/TPN/mdout-Bu.ref.mdp
butane-ref/aa-sims/TPN/mdrun.log
butane-ref/aa-sims/TPN/mdrun0.log
butane-ref/aa-sims/TPN/mdrun1.log
butane-ref/aa-sims/TPN/mdrun2.log
butane-ref/aa-sims/TPN/mdrun3.log
butane-ref/aa-sims/TPN/mdrun4.log
butane-ref/aa-sims/TPN/mdrun5.log
butane-ref/aa-sims/TPN/mdrun6.log
butane-ref/aa-sims/TPN/mdrun7.log
butane-ref/aa-sims/TPN/qsub.sh
butane-ref/aa-sims/TPN/run_gmx.sh
butane-ref/aa-sims/TVN/
butane-ref/aa-sims/TVN/cg-mapping-analysis/
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/Bu.angle.ndx
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/CH2A-CH2B-CH3B.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/CH2A-CH2B-CH3B.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/CH3A-CH2A-CH2B.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/CH3A-CH2A-CH2B.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/angles/angle.BuOH-Bu.sh
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/Bu.bond.ndx
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/bond-CH2-CH2.Bu.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/bond-CH2-CH2.Bu.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/bond-CH3-CH2.Bu.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/bond-CH3-CH2.Bu.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/bond-dist.sh
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/dist-bond-CH2-CH2.Bu.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/bonds/dist-bond-CH3-CH2.Bu.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/dihedrals/
butane-ref/aa-sims/TVN/cg-mapping-analysis/dihedrals/Bu.dihedral.ndx
butane-ref/aa-sims/TVN/cg-mapping-analysis/dihedrals/CH3-CH2-CH2-CH3.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/dihedrals/CH3-CH2-CH2-CH3.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/dihedrals/dihedral.Bu.sh
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/cgBu.ndx
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdf.sh
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH2-CH2.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH2-CH2.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH2-CH3.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH2-CH3.xvg
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH3-CH3.log
butane-ref/aa-sims/TVN/cg-mapping-analysis/rdfs/rdfCH3-CH3.xvg
butane-ref/aa-sims/TVN/mapping/
butane-ref/aa-sims/TVN/mapping/CGMap.sh
butane-ref/aa-sims/TVN/mapping/cgBu.gro
butane-ref/aa-sims/TVN/mapping/cgBu.mapped.gro
butane-ref/aa-sims/TVN/mapping/cgBu.mdp
butane-ref/aa-sims/TVN/mapping/cgBu.top
butane-ref/aa-sims/TVN/mapping/cgBu.tpr
butane-ref/aa-sims/TVN/mapping/cgBu.trr
butane-ref/aa-sims/TVN/mapping/mapBu.top
butane-ref/aa-sims/TVN/mapping/mdout.mdp
butane-ref/aa-sims/TVN/prod-5ns/
butane-ref/aa-sims/TVN/prod-5ns/Bu.ref.gro
butane-ref/aa-sims/TVN/prod-5ns/Bu.ref.log
butane-ref/aa-sims/TVN/prod-5ns/Bu.ref.trr
butane-ref/aa-sims/TVN/prod-5ns/reduce_frames.sh
butane-ref/aa-sims/TVN/prod-raw/
butane-ref/aa-sims/TVN/prod-raw/Bu.o991744
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.edr
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.gro
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.mdp
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.top
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.tpr
butane-ref/aa-sims/TVN/prod-raw/Bu.ref.trr
butane-ref/aa-sims/TVN/prod-raw/butane_oplsaa.itp
butane-ref/aa-sims/TVN/prod-raw/confout.gro
butane-ref/aa-sims/TVN/prod-raw/energy.log
butane-ref/aa-sims/TVN/prod-raw/energy.xvg
butane-ref/aa-sims/TVN/prod-raw/grompp.log
butane-ref/aa-sims/TVN/prod-raw/mapBu.top
butane-ref/aa-sims/TVN/prod-raw/mdout-Bu.ref.mdp
butane-ref/aa-sims/TVN/prod-raw/mdrun.log
butane-ref/aa-sims/TVN/prod-raw/mdrun0.log
butane-ref/aa-sims/TVN/prod-raw/mdrun1.log
butane-ref/aa-sims/TVN/prod-raw/mdrun2.log
butane-ref/aa-sims/TVN/prod-raw/mdrun3.log
butane-ref/aa-sims/TVN/prod-raw/mdrun4.log
butane-ref/aa-sims/TVN/prod-raw/mdrun5.log
butane-ref/aa-sims/TVN/prod-raw/mdrun6.log
butane-ref/aa-sims/TVN/prod-raw/mdrun7.log
butane-ref/aa-sims/TVN/prod-raw/qsub.sh
butane-ref/aa-sims/TVN/prod-raw/run_gmx.sh
butane-ref/aa-sims/TVN/steep/
butane-ref/aa-sims/TVN/steep/Bu-TPN.o990457
butane-ref/aa-sims/TVN/steep/Bu.ref.edr
butane-ref/aa-sims/TVN/steep/Bu.ref.gro
butane-ref/aa-sims/TVN/steep/Bu.ref.mdp
butane-ref/aa-sims/TVN/steep/Bu.ref.top
butane-ref/aa-sims/TVN/steep/Bu.ref.tpr
butane-ref/aa-sims/TVN/steep/Bu.ref.trr
butane-ref/aa-sims/TVN/steep/butane_oplsaa.itp
butane-ref/aa-sims/TVN/steep/confout.gro
butane-ref/aa-sims/TVN/steep/energy.xvg
butane-ref/aa-sims/TVN/steep/grompp.log
butane-ref/aa-sims/TVN/steep/mdout-Bu.ref.mdp
butane-ref/aa-sims/TVN/steep/mdrun.log
butane-ref/aa-sims/TVN/steep/mdrun0.log
butane-ref/aa-sims/TVN/steep/mdrun1.log
butane-ref/aa-sims/TVN/steep/mdrun2.log
butane-ref/aa-sims/TVN/steep/mdrun3.log
butane-ref/aa-sims/TVN/steep/qsub.sh
butane-ref/aa-sims/TVN/steep/run_gmx.sh
butane-ref/aa-sims/TVN/test-md/
butane-ref/aa-sims/TVN/test-md/Bu-TPN.o991167
butane-ref/aa-sims/TVN/test-md/Bu.ref.edr
butane-ref/aa-sims/TVN/test-md/Bu.ref.gro
butane-ref/aa-sims/TVN/test-md/Bu.ref.mdp
butane-ref/aa-sims/TVN/test-md/Bu.ref.top
butane-ref/aa-sims/TVN/test-md/Bu.ref.tpr
butane-ref/aa-sims/TVN/test-md/Bu.ref.trr
butane-ref/aa-sims/TVN/test-md/butane_oplsaa.itp
butane-ref/aa-sims/TVN/test-md/confout.gro
butane-ref/aa-sims/TVN/test-md/grompp.log
butane-ref/aa-sims/TVN/test-md/mdout-Bu.ref.mdp
butane-ref/aa-sims/TVN/test-md/mdrun.log
butane-ref/aa-sims/TVN/test-md/mdrun0.log
butane-ref/aa-sims/TVN/test-md/mdrun1.log
butane-ref/aa-sims/TVN/test-md/mdrun2.log
butane-ref/aa-sims/TVN/test-md/mdrun3.log
butane-ref/aa-sims/TVN/test-md/qsub.sh
butane-ref/aa-sims/TVN/test-md/run_gmx.sh
butane-ref/sort.sh