methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH/smaller-trajs/cgMethanolSPH.2500.trr methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH/smaller-trajs/cgMethanolSPH.5000.trr methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH/smaller-trajs/cgMethanolSPH.gro methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH/smaller-trajs/cgMethanolSPH.tpr methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH/smaller-trajs/reduce_frames.sh methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/ methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/cgMethanolSPH2.gro methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/cgMethanolSPH2.tpr methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/cgMethanolSPH2.trr methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/combine_traj.sh methanol-ref/AA-mapping/combined_10ns/2-site/MethanolSPH2/index.ndx methanol-ref/AA-mapping/combined_10ns/2-site/bonds/ methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/ methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/Methanol.bond.dist.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/Methanol.bond.log methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/Methanol.bond.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/bond-dist.sh methanol-ref/AA-mapping/combined_10ns/2-site/bonds/Methanol/index.ndx methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/ methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/MethanolSPH.bond.dist.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/MethanolSPH.bond.log methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/MethanolSPH.bond.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/bond-dist.sh methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH/index.ndx methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/ methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/MethanolSPH2.bond.dist.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/MethanolSPH2.bond.log methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/MethanolSPH2.bond.xvg methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/bond-dist.sh methanol-ref/AA-mapping/combined_10ns/2-site/bonds/MethanolSPH2/index.ndx methanol-ref/AA-mapping/combined_10ns/2-site/orientation/ methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/ methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.0.0-0.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.0.2-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.0.4-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.0.6-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.0.8-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.1.0-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.1.2-1.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.1.4-1.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.1.6-1.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/angle_O.AA.1.8-2.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/clean.sh methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/do_calc.sh methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.0.0-0.2.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.0.2-0.4.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.0.4-0.6.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.0.6-0.8.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.0.8-1.0.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.1.0-1.2.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.1.2-1.4.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.1.4-1.6.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.1.6-1.8.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/log.AA.1.8-2.0.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.0.0-0.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.0.2-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.0.4-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.0.6-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.0.8-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.1.0-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.1.2-1.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.1.4-1.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.1.6-1.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/orient.AA.1.8-2.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.0.0-0.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.0.2-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.0.4-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.0.6-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.0.8-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.1.0-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.1.2-1.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.1.4-1.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.1.6-1.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGC.AA.1.8-2.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.0.0-0.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.0.2-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.0.4-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.0.6-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.0.8-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.1.0-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.1.2-1.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.1.4-1.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.1.6-1.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/rdf-SPH-CGO.AA.1.8-2.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH.4.30.2010/run.sh methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/ methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.3-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.4-0.5.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.5-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.6-0.7.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.7-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.8-0.9.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.0.9-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.1.0-1.1.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/angle_O.AA.1.1-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/do_calc.sh methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.3-0.4.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.4-0.5.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.5-0.6.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.6-0.7.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.7-0.8.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.8-0.9.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.0.9-1.0.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.1.0-1.1.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/log.AA.1.1-1.2.txt methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.3-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.4-0.5.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.5-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.6-0.7.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.7-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.8-0.9.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.0.9-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.1.0-1.1.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/orient.AA.1.1-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.3-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.4-0.5.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.5-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.6-0.7.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.7-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.8-0.9.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.0.9-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.1.0-1.1.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGC.AA.1.1-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.3-0.4.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.4-0.5.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.5-0.6.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.6-0.7.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.7-0.8.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.8-0.9.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.0.9-1.0.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.1.0-1.1.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/rdf-SPH-CGO.AA.1.1-1.2.dat methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/run.sh methanol-ref/AA-mapping/combined_10ns/2-site/orientation/MethanolSPH/trial1.agr methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/Disp-rdf.o1015320 methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/calc_rdf.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/clean.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/index_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/index_files/cgMethanol.0-500000.ndx methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/log_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/log_files/rdf.mapped.CGC-CGC.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/log_files/rdf.mapped.CGC-CGO.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/log_files/rdf.mapped.CGO-CGO.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/qsub.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/rdf_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/rdf_files/rdf.mapped.CGC-CGC.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/rdf_files/rdf.mapped.CGC-CGO.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/rdf_files/rdf.mapped.CGO-CGO.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/Methanol/run_calc.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/Disp-rdf.o1015321 methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/calc_rdf.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/clean.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/index_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/index_files/cgMethanolSPH.0-5000000.ndx methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/rdf.mapped.CGC-CGC.DispCorrect.0-5000000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/rdf.mapped.CGC-CGO.DispCorrect.0-5000000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/rdf.mapped.CGO-CGO.DispCorrect.0-5000000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/rdf.mapped.SPH-CGC.DispCorrect.0-5000000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/log_files/rdf.mapped.SPH-CGO.DispCorrect.0-5000000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/qsub.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/rdf.mapped.CGC-CGC.DispCorrect.0-5000000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/rdf.mapped.CGC-CGO.DispCorrect.0-5000000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/rdf.mapped.CGO-CGO.DispCorrect.0-5000000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/rdf.mapped.SPH-CGC.DispCorrect.0-5000000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/rdf_files/rdf.mapped.SPH-CGO.DispCorrect.0-5000000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH/run_calc.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/Disp-rdf.o1015325 methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/calc_rdf.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/clean.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/index_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/index_files/cgMethanolSPH2.0-500000.ndx methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/rdf.mapped.CGC-CGC.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/rdf.mapped.CGC-CGO.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/rdf.mapped.CGO-CGO.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/rdf.mapped.SPH-CGC.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/log_files/rdf.mapped.SPH-CGO.DispCorrect.0-500000.log methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/qsub.sh methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/ methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/rdf.mapped.CGC-CGC.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/rdf.mapped.CGC-CGO.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/rdf.mapped.CGO-CGO.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/rdf.mapped.SPH-CGC.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/rdf_files/rdf.mapped.SPH-CGO.DispCorrect.0-500000.xvg methanol-ref/AA-mapping/combined_10ns/2-site/rdfs/MethanolSPH2/run_calc.sh methanol-ref/AA-sims/ methanol-ref/AA-sims/TPN-DispCorrect/ methanol-ref/AA-sims/TPN-DispCorrect/Methanol/ methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.o993620 methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.ref.edr methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.ref.gro methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.ref.top methanol-ref/AA-sims/TPN-DispCorrect/Methanol/Methanol.ref.tpr methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/ methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/box.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/box.sh methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.0-1000.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.0-1500.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.0-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.1000-2000.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.1500-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/box/energy.2000-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/confout.gro methanol-ref/AA-sims/TPN-DispCorrect/Methanol/energy.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/energy.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/grompp.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdout-Methanol.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun0.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun1.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun2.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun3.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun4.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun5.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun6.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/mdrun7.log methanol-ref/AA-sims/TPN-DispCorrect/Methanol/methanol_oplsaa.itp methanol-ref/AA-sims/TPN-DispCorrect/Methanol/qsub.sh methanol-ref/AA-sims/TPN-DispCorrect/Methanol/run_gmx.sh methanol-ref/AA-sims/TPN-DispCorrect/Methanol/table.xvg methanol-ref/AA-sims/TPN-DispCorrect/Methanol/tablep.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/ methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.o993621 methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.ref.edr methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.ref.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.ref.top methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/MethanolSPH.ref.tpr methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/ methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/MethanolSPH.ref.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/box.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/box.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.0-1000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.0-1500.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.0-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.1000-2000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.1500-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/energy.2000-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/box/gro.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/confout.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/energy.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/energy.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/grompp.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdout-MethanolSPH.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun0.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun1.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun2.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun3.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun4.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun5.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun6.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/mdrun7.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/methanol_oplsaa.itp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/qsub.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/run_gmx.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/sphere.itp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/table.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/table_SPH_opls_154.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/table_SPH_opls_156.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/table_SPH_opls_157.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/table_index.ndx methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/tablep.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH/traj.xtc methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/ methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.o993622 methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.ref.edr methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.ref.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.ref.top methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/MethanolSPH2.ref.tpr methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/ methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/MethanolSPH2.ref.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/box.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/box.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.0-1000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.0-1500.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.0-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.1000-2000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.1500-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/energy.2000-3000.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/box/gro.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/confout.gro methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/energy.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/energy.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/grompp.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdout-MethanolSPH2.ref.mdp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun0.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun1.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun2.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun3.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun4.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun5.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun6.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/mdrun7.log methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/methanol_oplsaa.itp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/qsub.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/run_gmx.sh methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/sphere.itp methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/table.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/table_SPH_opls_154.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/table_SPH_opls_156.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/table_SPH_opls_157.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/table_index.ndx methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/tablep.xvg methanol-ref/AA-sims/TPN-DispCorrect/MethanolSPH2/traj.xtc methanol-ref/AA-sims/TVN-DispCorrect/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/Methanol/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/Methanol/Methanol.ref.gro methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/Methanol/Methanol.ref.log methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/Methanol/Methanol.ref.trr methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/Methanol/reduce_frames.sh methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH/MethanolSPH.ref.gro methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH/MethanolSPH.ref.log methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH/MethanolSPH.ref.trr methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH/reduce_frames.sh methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH2/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH2/MethanolSPH2.ref.gro methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH2/MethanolSPH2.ref.log methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH2/MethanolSPH2.ref.trr methanol-ref/AA-sims/TVN-DispCorrect/5.0ns/MethanolSPH2/reduce_frames.sh methanol-ref/AA-sims/TVN-DispCorrect/5.0ns_2/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns_2/Methanol/ methanol-ref/AA-sims/TVN-DispCorrect/5.0ns_2/Methanol/Methanol.ref.gro methanol-ref/AA-sims/TVN-DispCorrect/5.0ns_2/Methanol/Methanol.ref.log